Index

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__init__() (gudhi.AlphaComplex method) (gudhi.CoverComplex method) (gudhi.CubicalComplex method) (gudhi.EuclideanStrongWitnessComplex method) (gudhi.EuclideanWitnessComplex method) (gudhi.PeriodicCubicalComplex method) (gudhi.RipsComplex method) (gudhi.SimplexTree method) (gudhi.StrongWitnessComplex method) (gudhi.TangentialComplex method) (gudhi.WitnessComplex method)

__min_birth_max_death() (in module gudhi)

A

AlphaComplex (class in gudhi)

assign_filtration() (gudhi.SimplexTree method)

B

betti_numbers() (gudhi.CubicalComplex method) (gudhi.PeriodicCubicalComplex method) (gudhi.SimplexTree method)

bottleneck_distance() (in module gudhi)

C

compute_confidence_level_from_distance() (gudhi.CoverComplex method) compute_distance_from_confidence_level() (gudhi.CoverComplex method) compute_distribution() (gudhi.CoverComplex method) compute_p_value() (gudhi.CoverComplex method) compute_PD() (gudhi.CoverComplex method) CoverComplex (class in gudhi) create_simplex_tree() (gudhi.AlphaComplex method) (gudhi.CoverComplex method) (gudhi.EuclideanStrongWitnessComplex method) (gudhi.EuclideanWitnessComplex method) (gudhi.RipsComplex method) (gudhi.StrongWitnessComplex method) (gudhi.TangentialComplex method) (gudhi.WitnessComplex method)

CubicalComplex (class in gudhi)

D

dimension() (gudhi.CubicalComplex method) (gudhi.PeriodicCubicalComplex method) (gudhi.SimplexTree method)

E

EuclideanStrongWitnessComplex (class in gudhi)

EuclideanWitnessComplex (class in gudhi) expansion() (gudhi.SimplexTree method)

F

filtration() (gudhi.SimplexTree method) find() (gudhi.SimplexTree method)

find_simplices() (gudhi.CoverComplex method) fix_inconsistencies_using_perturbation() (gudhi.TangentialComplex method)

G

get_cofaces() (gudhi.SimplexTree method) get_filtration() (gudhi.SimplexTree method) get_point() (gudhi.AlphaComplex method) (gudhi.EuclideanStrongWitnessComplex method) (gudhi.EuclideanWitnessComplex method) (gudhi.TangentialComplex method)

get_skeleton() (gudhi.SimplexTree method) get_star() (gudhi.SimplexTree method)

I

initialize_filtration() (gudhi.SimplexTree method)

insert() (gudhi.SimplexTree method)

M

make_filtration_non_decreasing() (gudhi.SimplexTree method)

N

num_inconsistent_simplices() (gudhi.TangentialComplex method) num_inconsistent_stars() (gudhi.TangentialComplex method) num_simplices() (gudhi.CubicalComplex method) (gudhi.PeriodicCubicalComplex method) (gudhi.SimplexTree method) (gudhi.TangentialComplex method)

num_vertices() (gudhi.SimplexTree method) (gudhi.TangentialComplex method)

P

PeriodicCubicalComplex (class in gudhi) persistence() (gudhi.CubicalComplex method) (gudhi.PeriodicCubicalComplex method) (gudhi.SimplexTree method) persistence_intervals_in_dimension() (gudhi.CubicalComplex method) (gudhi.PeriodicCubicalComplex method) (gudhi.SimplexTree method) persistence_pairs() (gudhi.SimplexTree method)

persistent_betti_numbers() (gudhi.CubicalComplex method) (gudhi.PeriodicCubicalComplex method) (gudhi.SimplexTree method) plot_dot() (gudhi.CoverComplex method) plot_off() (gudhi.CoverComplex method) plot_persistence_barcode() (in module gudhi) plot_persistence_diagram() (in module gudhi) prune_above_filtration() (gudhi.SimplexTree method)

R

read_lower_triangular_matrix_from_csv_file() (in module gudhi) read_off() (in module gudhi) read_persistence_intervals_grouped_by_dimension() (in module gudhi)

read_persistence_intervals_in_dimension() (in module gudhi) read_point_cloud() (gudhi.CoverComplex method) remove_maximal_simplex() (gudhi.SimplexTree method) RipsComplex (class in gudhi)

S

set_automatic_resolution() (gudhi.CoverComplex method) set_color_from_coordinate() (gudhi.CoverComplex method) set_color_from_file() (gudhi.CoverComplex method) set_color_from_vector() (gudhi.CoverComplex method) set_cover_from_file() (gudhi.CoverComplex method) set_cover_from_function() (gudhi.CoverComplex method) set_cover_from_Voronoi() (gudhi.CoverComplex method) set_dimension() (gudhi.SimplexTree method) set_function_from_coordinate() (gudhi.CoverComplex method) set_function_from_file() (gudhi.CoverComplex method) set_function_from_range() (gudhi.CoverComplex method) set_gain() (gudhi.CoverComplex method)

set_graph_from_automatic_rips() (gudhi.CoverComplex method) set_graph_from_file() (gudhi.CoverComplex method) set_graph_from_OFF() (gudhi.CoverComplex method) set_graph_from_rips() (gudhi.CoverComplex method) set_mask() (gudhi.CoverComplex method) set_resolution_with_interval_length() (gudhi.CoverComplex method) set_resolution_with_interval_number() (gudhi.CoverComplex method) set_subsampling() (gudhi.CoverComplex method) set_type() (gudhi.CoverComplex method) set_verbose() (gudhi.CoverComplex method) SimplexTree (class in gudhi) StrongWitnessComplex (class in gudhi) subpopulation() (gudhi.CoverComplex method)

T

TangentialComplex (class in gudhi)

U

upper_bound_dimension() (gudhi.SimplexTree method)

W

WitnessComplex (class in gudhi)

write_info() (gudhi.CoverComplex method) write_persistence_diagram() (gudhi.SimplexTree method)