persistence_landscapes/compute_distance_of_landscapes.cpp

/*    This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
 *    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
 *    Author(s):       Pawel Dlotko
 *
 *    Copyright (C) 2016 Inria
 *
 *    Modification(s):
 *      - YYYY/MM Author: Description of the modification
 */
 
#include <gudhi/Persistence_landscape.h>
 
#include <iostream>
#include <sstream>
#include <limits>
#include <vector>
 
using Persistence_landscape = Gudhi::Persistence_representations::Persistence_landscape;
 
int main(int argc, char** argv) {
  std::clog << "This program computes distance of persistence landscapes stored in files (the files needs to be "
            << "created beforehand).\n"
            << "The first parameter of a program is an integer p. The program compute L^p distance of the two heat "
            << "maps. For L^infty distance choose p = -1. \n"
            << "The remaining parameters of this program are names of files with persistence landscapes.\n";
 
  if (argc < 3) {
    std::clog << "Wrong number of parameters, the program will now terminate \n";
    return 1;
  }
 
  int pp = atoi(argv[1]);
  double p = std::numeric_limits<double>::max();
  if (pp != -1) {
    p = pp;
  }
 
  std::vector<const char*> filenames;
  for (int i = 2; i < argc; ++i) {
    filenames.push_back(argv[i]);
  }
  std::vector<Persistence_landscape> landscaspes;
  landscaspes.reserve(filenames.size());
  for (size_t file_no = 0; file_no != filenames.size(); ++file_no) {
    Persistence_landscape l;
    l.load_landscape_from_file(filenames[file_no]);
    landscaspes.push_back(l);
  }
 
  // and now we will compute the scalar product of landscapes.
 
  // first we prepare an array:
  std::vector<std::vector<double> > distance(filenames.size());
  for (size_t i = 0; i != filenames.size(); ++i) {
    std::vector<double> v(filenames.size(), 0);
    distance[i] = v;
  }
 
  // and now we can compute the distances:
  for (size_t i = 0; i != landscaspes.size(); ++i) {
    for (size_t j = i; j != landscaspes.size(); ++j) {
      distance[i][j] = distance[j][i] = compute_distance_of_landscapes(landscaspes[i], landscaspes[j], p);
    }
  }
 
  // and now output the result to the screen and a file:
  std::ofstream out;
  out.open("distance.land");
  for (size_t i = 0; i != distance.size(); ++i) {
    for (size_t j = 0; j != distance.size(); ++j) {
      std::clog << distance[i][j] << " ";
      out << distance[i][j] << " ";
    }
    std::clog << std::endl;
    out << std::endl;
  }
  out.close();
 
  std::clog << "Distance can be found in 'distance.land' file\n";
  return 0;
}