Strong_witness_complex.h

/*    This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
 *    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
 *    Author(s):       Siargey Kachanovich
 *
 *    Copyright (C) 2015 Inria
 *
 *    Modification(s):
 *      - YYYY/MM Author: Description of the modification
 */
 
#ifndef STRONG_WITNESS_COMPLEX_H_
#define STRONG_WITNESS_COMPLEX_H_
 
#include <gudhi/Active_witness/Active_witness.h>
 
#include <utility>
#include <vector>
#include <list>
#include <limits>
 
namespace Gudhi {
 
namespace witness_complex {
 
template< class Nearest_landmark_table_ >
class Strong_witness_complex {
 private:
  typedef typename Nearest_landmark_table_::value_type               Nearest_landmark_range;
  typedef std::size_t                                                Witness_id;
  typedef std::size_t                                                Landmark_id;
  typedef std::pair<Landmark_id, double>                             Id_distance_pair;
  typedef Active_witness<Id_distance_pair, Nearest_landmark_range>   ActiveWitness;
  typedef std::list< ActiveWitness >                                 ActiveWitnessList;
  typedef std::vector< Landmark_id >                                 typeVectorVertex;
  typedef std::vector<Nearest_landmark_range>                        Nearest_landmark_table_internal;
  typedef Landmark_id Vertex_handle;
 
 protected:
  Nearest_landmark_table_internal              nearest_landmark_table_;
 
 public:
  /* @name Constructor
   */
 
 
  Strong_witness_complex() {
  }
 
  Strong_witness_complex(Nearest_landmark_table_ const & nearest_landmark_table)
    : nearest_landmark_table_(std::begin(nearest_landmark_table), std::end(nearest_landmark_table)) {
  }
 
  template < typename SimplicialComplexForWitness >
  bool create_complex(SimplicialComplexForWitness& complex,
                      double  max_alpha_square,
                      Landmark_id limit_dimension = std::numeric_limits<Landmark_id>::max()) const {
    Landmark_id complex_dim = 0;
    if (complex.num_vertices() > 0) {
      std::cerr << "Strong witness complex cannot create complex - complex is not empty.\n";
      return false;
    }
    if (max_alpha_square < 0) {
      std::cerr << "Strong witness complex cannot create complex - squared relaxation parameter must be "
                << "non-negative.\n";
      return false;
    }
    for (auto w : nearest_landmark_table_) {
      ActiveWitness aw(w);
      typeVectorVertex simplex;
      typename ActiveWitness::iterator aw_it = aw.begin();
      float lim_dist2 = aw.begin()->second + max_alpha_square;
      while ((Landmark_id)simplex.size() <= limit_dimension && aw_it != aw.end() && aw_it->second < lim_dist2) {
        simplex.push_back(aw_it->first);
        complex.insert_simplex_and_subfaces(simplex, aw_it->second - aw.begin()->second);
        aw_it++;
      }
      // continue inserting limD-faces of the following simplices
      typeVectorVertex& vertices = simplex;  // 'simplex' now will be called vertices
      while (aw_it != aw.end() && aw_it->second < lim_dist2) {
        typeVectorVertex facet = {};
        add_all_faces_of_dimension(limit_dimension, vertices, vertices.begin(), aw_it,
                                   aw_it->second - aw.begin()->second, facet, complex);
        vertices.push_back(aw_it->first);
        aw_it++;
      }
      if ((Landmark_id)simplex.size() - 1 > complex_dim)
        complex_dim = simplex.size() - 1;
    }
    return true;
  }
 
 
 private:
  template < typename SimplicialComplexForWitness >
  void add_all_faces_of_dimension(Landmark_id dim,
                                  typeVectorVertex& vertices,
                                  typename typeVectorVertex::iterator curr_it,
                                  typename ActiveWitness::iterator aw_it,
                                  double filtration_value,
                                  typeVectorVertex& simplex,
                                  SimplicialComplexForWitness& sc) const {
    if (dim > 0) {
      while (curr_it != vertices.end()) {
        simplex.push_back(*curr_it);
        ++curr_it;
        add_all_faces_of_dimension(dim-1,
                                   vertices,
                                   curr_it,
                                   aw_it,
                                   filtration_value,
                                   simplex,
                                   sc);
        simplex.pop_back();
        add_all_faces_of_dimension(dim,
                                   vertices,
                                   curr_it,
                                   aw_it,
                                   filtration_value,
                                   simplex,
                                   sc);
      }
    } else if (dim == 0) {
      simplex.push_back(aw_it->first);
      sc.insert_simplex_and_subfaces(simplex, filtration_value);
      simplex.pop_back();
    }
  }
};
 
}  // namespace witness_complex
 
}  // namespace Gudhi
 
#endif  // STRONG_WITNESS_COMPLEX_H_