Persistence_graph.h

/*    This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
 *    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
 *    Author:       Francois Godi
 *
 *    Copyright (C) 2015 Inria
 *
 *    Modification(s):
 *      - YYYY/MM Author: Description of the modification
 */
 
#ifndef PERSISTENCE_GRAPH_H_
#define PERSISTENCE_GRAPH_H_
 
#include <gudhi/Internal_point.h>
 
#ifdef GUDHI_USE_TBB
#include <tbb/parallel_sort.h>
#endif
 
#include <vector>
#include <algorithm>
#include <limits>  // for numeric_limits
#include <cmath>
 
namespace Gudhi {
 
namespace persistence_diagram {
 
class Persistence_graph {
public:
  template<typename Persistence_diagram1, typename Persistence_diagram2>
  Persistence_graph(const Persistence_diagram1& diag1, const Persistence_diagram2& diag2, double e);
  bool on_the_u_diagonal(int u_point_index) const;
  bool on_the_v_diagonal(int v_point_index) const;
  int corresponding_point_in_u(int v_point_index) const;
  int corresponding_point_in_v(int u_point_index) const;
  double distance(int u_point_index, int v_point_index) const;
  int size() const;
  double bottleneck_alive() const;
  std::vector<double> sorted_distances() const;
  double max_dist_to_diagonal() const;
  Internal_point get_u_point(int u_point_index) const;
  Internal_point get_v_point(int v_point_index) const;
 
private:
  std::vector<Internal_point> u;
  std::vector<Internal_point> v;
  double b_alive;
};
 
template<typename Persistence_diagram1, typename Persistence_diagram2>
Persistence_graph::Persistence_graph(const Persistence_diagram1 &diag1,
                                     const Persistence_diagram2 &diag2, double e)
  : u(), v(), b_alive(0.) {
  std::vector<double> u_alive;
  std::vector<double> v_alive;
  std::vector<double> u_nalive;
  std::vector<double> v_nalive;
  int u_inf = 0;
  int v_inf = 0;
  double inf = std::numeric_limits<double>::infinity();
  double neginf = -inf;
 
  for (auto it = std::begin(diag1); it != std::end(diag1); ++it) {
    if (std::get<0>(*it) != inf && std::get<1>(*it) != neginf){
      if (std::get<0>(*it) == neginf && std::get<1>(*it) == inf)
        u_inf++;
      else if (std::get<0>(*it) == neginf)
        u_nalive.push_back(std::get<1>(*it));
      else if (std::get<1>(*it) == inf)
        u_alive.push_back(std::get<0>(*it));
      else if (std::get<1>(*it) - std::get<0>(*it) > e)
        u.push_back(Internal_point(std::get<0>(*it), std::get<1>(*it), u.size()));
    }
  }
  for (auto it = std::begin(diag2); it != std::end(diag2); ++it) {
    if (std::get<0>(*it) != inf && std::get<1>(*it) != neginf){
      if (std::get<0>(*it) == neginf && std::get<1>(*it) == inf)
        v_inf++;
      else if (std::get<0>(*it) == neginf)
        v_nalive.push_back(std::get<1>(*it));
      else if (std::get<1>(*it) == inf)
        v_alive.push_back(std::get<0>(*it));
      else if (std::get<1>(*it) - std::get<0>(*it) > e)
        v.push_back(Internal_point(std::get<0>(*it), std::get<1>(*it), v.size()));
    }
  }
  if (u.size() < v.size())
    swap(u, v);
 
  if (u_alive.size() != v_alive.size() || u_nalive.size() != v_nalive.size() || u_inf != v_inf) {
    b_alive = std::numeric_limits<double>::infinity();
  } else {
    std::sort(u_alive.begin(), u_alive.end());
    std::sort(v_alive.begin(), v_alive.end());
    std::sort(u_nalive.begin(), u_nalive.end());
    std::sort(v_nalive.begin(), v_nalive.end());
    for (auto it_u = u_alive.cbegin(), it_v = v_alive.cbegin(); it_u != u_alive.cend(); ++it_u, ++it_v)
      b_alive = (std::max)(b_alive, std::fabs(*it_u - *it_v));
    for (auto it_u = u_nalive.cbegin(), it_v = v_nalive.cbegin(); it_u != u_nalive.cend(); ++it_u, ++it_v)
      b_alive = (std::max)(b_alive, std::fabs(*it_u - *it_v));
  }
}
 
inline bool Persistence_graph::on_the_u_diagonal(int u_point_index) const {
  return u_point_index >= static_cast<int> (u.size());
}
 
inline bool Persistence_graph::on_the_v_diagonal(int v_point_index) const {
  return v_point_index >= static_cast<int> (v.size());
}
 
inline int Persistence_graph::corresponding_point_in_u(int v_point_index) const {
  return on_the_v_diagonal(v_point_index) ?
        v_point_index - static_cast<int> (v.size()) : v_point_index + static_cast<int> (u.size());
}
 
inline int Persistence_graph::corresponding_point_in_v(int u_point_index) const {
  return on_the_u_diagonal(u_point_index) ?
        u_point_index - static_cast<int> (u.size()) : u_point_index + static_cast<int> (v.size());
}
 
inline double Persistence_graph::distance(int u_point_index, int v_point_index) const {
  if (on_the_u_diagonal(u_point_index) && on_the_v_diagonal(v_point_index))
    return 0.;
  Internal_point p_u = get_u_point(u_point_index);
  Internal_point p_v = get_v_point(v_point_index);
  return (std::max)(std::fabs(p_u.x() - p_v.x()), std::fabs(p_u.y() - p_v.y()));
}
 
inline int Persistence_graph::size() const {
  return static_cast<int> (u.size() + v.size());
}
 
inline double Persistence_graph::bottleneck_alive() const {
  return b_alive;
}
 
inline std::vector<double> Persistence_graph::sorted_distances() const {
  std::vector<double> distances;
  distances.push_back(0.);  // for empty diagrams
  for (int u_point_index = 0; u_point_index < size(); ++u_point_index) {
    distances.push_back(distance(u_point_index, corresponding_point_in_v(u_point_index)));
    for (int v_point_index = 0; v_point_index < size(); ++v_point_index)
      distances.push_back(distance(u_point_index, v_point_index));
  }
#ifdef GUDHI_USE_TBB
  tbb::parallel_sort(distances.begin(), distances.end());
#else
  std::sort(distances.begin(), distances.end());
#endif
  return distances;
}
 
inline Internal_point Persistence_graph::get_u_point(int u_point_index) const {
  if (!on_the_u_diagonal(u_point_index))
    return u.at(u_point_index);
  Internal_point projector = v.at(corresponding_point_in_v(u_point_index));
  double m = (projector.x() + projector.y()) / 2.;
  return Internal_point(m, m, u_point_index);
}
 
inline Internal_point Persistence_graph::get_v_point(int v_point_index) const {
  if (!on_the_v_diagonal(v_point_index))
    return v.at(v_point_index);
  Internal_point projector = u.at(corresponding_point_in_u(v_point_index));
  double m = (projector.x() + projector.y()) / 2.;
  return Internal_point(m, m, v_point_index);
}
 
inline double Persistence_graph::max_dist_to_diagonal() const {
  double max = 0.;
  for (auto& p : u)
    max = (std::max)(max, p.y() - p.x());
  for (auto& p : v)
    max = (std::max)(max, p.y() - p.x());
  return max / 2;
}
 
}  // namespace persistence_diagram
 
}  // namespace Gudhi
 
#endif  // PERSISTENCE_GRAPH_H_