PSSK.h

/*    This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
 *    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
 *    Author(s):       Pawel Dlotko
 *
 *    Copyright (C) 2016 Inria
 *
 *    Modification(s):
 *      - YYYY/MM Author: Description of the modification
 */
 
#ifndef PSSK_H_
#define PSSK_H_
 
// gudhi include
#include <gudhi/Persistence_heat_maps.h>
 
#include <limits>
#include <utility>
#include <vector>
 
namespace Gudhi {
namespace Persistence_representations {
 
class PSSK : public Persistence_heat_maps<constant_scaling_function> {
 public:
  PSSK() : Persistence_heat_maps() {}
 
  PSSK(const std::vector<std::pair<double, double> >& interval,
       std::vector<std::vector<double> > filter = create_Gaussian_filter(5, 1), size_t number_of_pixels = 1000,
       double min_ = -1, double max_ = -1)
      : Persistence_heat_maps() {
    this->construct(interval, filter, number_of_pixels, min_, max_);
  }
 
  PSSK(const char* filename, std::vector<std::vector<double> > filter = create_Gaussian_filter(5, 1),
       size_t number_of_pixels = 1000, double min_ = -1, double max_ = -1,
       unsigned dimension = std::numeric_limits<unsigned>::max())
      : Persistence_heat_maps() {
    std::vector<std::pair<double, double> > intervals_;
    if (dimension == std::numeric_limits<unsigned>::max()) {
      intervals_ = read_persistence_intervals_in_one_dimension_from_file(filename);
    } else {
      intervals_ = read_persistence_intervals_in_one_dimension_from_file(filename, dimension);
    }
    this->construct(intervals_, filter, number_of_pixels, min_, max_);
  }
 
 protected:
  void construct(const std::vector<std::pair<double, double> >& intervals_,
                 std::vector<std::vector<double> > filter = create_Gaussian_filter(5, 1),
                 size_t number_of_pixels = 1000, double min_ = -1, double max_ = -1);
};
 
// if min_ == max_, then the program is requested to set up the values itself based on persistence intervals
void PSSK::construct(const std::vector<std::pair<double, double> >& intervals_,
                     std::vector<std::vector<double> > filter, size_t number_of_pixels, double min_, double max_) {
  bool dbg = false;
  if (dbg) {
    std::cerr << "Entering construct procedure \n";
    getchar();
  }
 
  if (min_ == max_) {
    // in this case, we want the program to set up the min_ and max_ values by itself.
    min_ = std::numeric_limits<int>::max();
    max_ = -std::numeric_limits<int>::max();
 
    for (size_t i = 0; i != intervals_.size(); ++i) {
      if (intervals_[i].first < min_) min_ = intervals_[i].first;
      if (intervals_[i].second > max_) max_ = intervals_[i].second;
    }
    // now we have the structure filled in, and moreover we know min_ and max_ values of the interval, so we know the
    // range.
 
    // add some more space:
    min_ -= fabs(max_ - min_) / 100;
    max_ += fabs(max_ - min_) / 100;
  }
 
  if (dbg) {
    std::cerr << "min_ : " << min_ << std::endl;
    std::cerr << "max_ : " << max_ << std::endl;
    std::cerr << "number_of_pixels : " << number_of_pixels << std::endl;
    getchar();
  }
 
  this->min_ = min_;
  this->max_ = max_;
 
  // initialization of the structure heat_map
  std::vector<std::vector<double> > heat_map_;
  for (size_t i = 0; i != number_of_pixels; ++i) {
    std::vector<double> v(number_of_pixels, 0);
    heat_map_.push_back(v);
  }
  this->heat_map = heat_map_;
 
  if (dbg) std::cerr << "Done creating of the heat map, now we will fill in the structure \n";
 
  for (size_t pt_nr = 0; pt_nr != intervals_.size(); ++pt_nr) {
    // compute the value of intervals_[pt_nr] in the grid:
    int x_grid =
        static_cast<int>((intervals_[pt_nr].first - this->min_) / (this->max_ - this->min_) * number_of_pixels);
    int y_grid =
        static_cast<int>((intervals_[pt_nr].second - this->min_) / (this->max_ - this->min_) * number_of_pixels);
 
    if (dbg) {
      std::cerr << "point : " << intervals_[pt_nr].first << " , " << intervals_[pt_nr].second << std::endl;
      std::cerr << "x_grid : " << x_grid << std::endl;
      std::cerr << "y_grid : " << y_grid << std::endl;
    }
 
    // x_grid and y_grid gives a center of the kernel. We want to have its lower left corner. To get this, we need to
    // shift x_grid and y_grid by a grid diameter.
    x_grid -= filter.size() / 2;
    y_grid -= filter.size() / 2;
    // note that the numbers x_grid and y_grid may be negative.
 
    if (dbg) {
      std::cerr << "After shift : \n";
      std::cerr << "x_grid : " << x_grid << std::endl;
      std::cerr << "y_grid : " << y_grid << std::endl;
      std::cerr << "filter.size() : " << filter.size() << std::endl;
      getchar();
    }
 
    for (size_t i = 0; i != filter.size(); ++i) {
      for (size_t j = 0; j != filter.size(); ++j) {
        // if the point (x_grid+i,y_grid+j) is the correct point in the grid.
        if (((x_grid + i) >= 0) && (x_grid + i < this->heat_map.size()) && ((y_grid + j) >= 0) &&
            (y_grid + j < this->heat_map.size())) {
          if (dbg) {
            std::cerr << y_grid + j << " " << x_grid + i << std::endl;
          }
          this->heat_map[y_grid + j][x_grid + i] += filter[i][j];
          this->heat_map[x_grid + i][y_grid + j] += -filter[i][j];
        }
      }
    }
  }
}  // construct
 
}  // namespace Persistence_representations
}  // namespace Gudhi
 
#endif  // PSSK_H_